mthfd1l protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mthfd1l

Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like. (886 aa)

Predicted Functional Partners:

gart

0.999

LOC108237459

0.975

ENSKMAP00000004758

0.974

atic

0.974

LOC108233658

0.973

LOC108234535

0.973

SHMT2

0.971

LOC108231703

0.971

shmt1

0.971

LOC108236240

0.971

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000004758	LOC108231703	ENSKMAP00000004758	ENSKMAP00000017188	MGS domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.972
ENSKMAP00000004758	LOC108233658	ENSKMAP00000004758	ENSKMAP00000007370	MGS domain-containing protein.	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.	0.972
ENSKMAP00000004758	LOC108234535	ENSKMAP00000004758	ENSKMAP00000024947	MGS domain-containing protein.	Uncharacterized protein.	0.972
ENSKMAP00000004758	LOC108236240	ENSKMAP00000004758	ENSKMAP00000021003	MGS domain-containing protein.	Serine hydroxymethyltransferase 1 (soluble).	0.972
ENSKMAP00000004758	LOC108237459	ENSKMAP00000004758	ENSKMAP00000029916	MGS domain-containing protein.	Zgc:153031.	0.942
ENSKMAP00000004758	SHMT2	ENSKMAP00000004758	ENSKMAP00000016413	MGS domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.972
ENSKMAP00000004758	atic	ENSKMAP00000004758	ENSKMAP00000015582	MGS domain-containing protein.	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.989
ENSKMAP00000004758	gart	ENSKMAP00000004758	ENSKMAP00000001257	MGS domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.999
ENSKMAP00000004758	mthfd1l	ENSKMAP00000004758	ENSKMAP00000012743	MGS domain-containing protein.	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like.	0.974
ENSKMAP00000004758	shmt1	ENSKMAP00000004758	ENSKMAP00000020923	MGS domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.972
LOC108231703	ENSKMAP00000004758	ENSKMAP00000017188	ENSKMAP00000004758	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	MGS domain-containing protein.	0.972
LOC108231703	LOC108233658	ENSKMAP00000017188	ENSKMAP00000007370	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.	0.981
LOC108231703	LOC108234535	ENSKMAP00000017188	ENSKMAP00000024947	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Uncharacterized protein.	0.981
LOC108231703	LOC108237459	ENSKMAP00000017188	ENSKMAP00000029916	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Zgc:153031.	0.966
LOC108231703	atic	ENSKMAP00000017188	ENSKMAP00000015582	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.972
LOC108231703	gart	ENSKMAP00000017188	ENSKMAP00000001257	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.999
LOC108231703	mthfd1l	ENSKMAP00000017188	ENSKMAP00000012743	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like.	0.971
LOC108233658	ENSKMAP00000004758	ENSKMAP00000007370	ENSKMAP00000004758	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.	MGS domain-containing protein.	0.972
LOC108233658	LOC108231703	ENSKMAP00000007370	ENSKMAP00000017188	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.981
LOC108233658	LOC108234535	ENSKMAP00000007370	ENSKMAP00000024947	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.	Uncharacterized protein.	0.901