STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000013052Uncharacterized protein. (363 aa)    
Predicted Functional Partners:
LOC108241575
FIP1 like 1b (S. cerevisiae).
   
 0.969
ENSKMAP00000021047
Cleavage and polyadenylation specific factor 4.
    
 0.968
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.968
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.967
sympk
Symplekin.
   
 0.967
ENSKMAP00000001637
WD repeat domain 33.
   
 0.965
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.957
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.956
LOC108249674
Cleavage and polyadenylation specific factor 3.
   
 0.922
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.922
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.