STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108245875Doublesex and mab-3 related transcription factor 1. (288 aa)    
Predicted Functional Partners:
amh
TGF_BETA_2 domain-containing protein.
      
 0.821
LOC108241363
SRY-box transcription factor 9b.
    
 0.783
LOC108250266
Cytochrome P450, family 19, subfamily A, polypeptide 1a.
      
 0.755
sox8
SRY-box transcription factor 8.
    
 0.743
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.741
kptn
Kaptin (actin binding protein).
    
 0.722
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.716
ENSKMAP00000009870
HMG box domain-containing protein.
    
 0.695
depdc5
DEP domain containing 5.
   
 0.695
wdr59
WD repeat domain 59.
    
 0.685
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.