STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sppl3Signal peptide peptidase 3. (383 aa)    
Predicted Functional Partners:
nagpa
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
      
 0.568
apip
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.
      
 0.567
st3gal4
ST3 beta-galactoside alpha-2,3-sialyltransferase 4; Belongs to the glycosyltransferase 29 family.
      
 0.525
ENSKMAP00000011629
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.525
SLC35A4
Solute carrier family 35 member A4.
   
  
 0.495
slc35a1
Solute carrier family 35 member A1.
   
  
 0.495
fam98a
Family with sequence similarity 98 member A.
      
 0.489
LOC108236372
Nodal modulator.
      
 0.439
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.437
sec61a1
Plug_translocon domain-containing protein.
   
  
 0.418
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.