STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax6Paired box 6b. (449 aa)    
Predicted Functional Partners:
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.757
LOC108246926
SIX homeobox 3b.
   
 
 0.693
six3
SIX homeobox 3a.
   
 
 0.691
LOC108239982
HRas proto-oncogene, GTPase a.
   
 
 0.689
vax1
Ventral anterior homeobox 1.
    
 
0.689
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.681
LOC108231131
Retinal outer segment membrane protein 1b.
      
 0.667
SHROOM2
Shroom family member 2.
      
 0.667
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 0.642
timm9
Translocase of inner mitochondrial membrane 9 homolog.
   
 
 0.640
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.