STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsph14Cnd1 domain-containing protein. (340 aa)    
Predicted Functional Partners:
cfap52
Cilia and flagella associated protein 52.
   
 
 0.773
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
 
 0.730
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.711
dlec1
DLEC1 cilia and flagella associated protein.
    
 
 0.644
ankef1
Ankyrin repeat and EF-hand domain containing 1a.
   
 
 0.642
lrrc34
Leucine rich repeat containing 34.
    
 
 0.637
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
      
 0.631
spata18
Spermatogenesis associated 18.
   
  
 0.628
ENSKMAP00000017008
Uncharacterized protein.
      
 0.620
pacrg
PARK2 co-regulated.
   
 
 0.612
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.