STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmtr1Cap methyltransferase 1. (827 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
   
 
 0.604
polg
Polymerase (DNA directed), gamma.
   
    0.584
ambra1
Autophagy/beclin-1 regulator 1b.
   
    0.582
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.570
ccdc92
Coiled-coil domain containing 92.
      
 0.569
ccdc115
Coiled-coil domain containing 115.
      
 0.565
LOC108234866
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 
 0.530
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
   
  
 0.504
fubp1
Far upstream element (FUSE) binding protein 1.
   
  
 0.500
ust
Uronyl 2-sulfotransferase a.
      
 0.489
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.