STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhsl1NHS-like 1b. (1662 aa)    
Predicted Functional Partners:
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
      
 0.660
LOC108235738
Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family.
      
 0.635
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1.
      
 0.633
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
      
 0.491
reps2
RALBP1 associated Eps domain containing 2.
      
 0.489
PRAG1
PEAK1 related, kinase-activating pseudokinase 1.
  
     0.427
LOC108248636
SH3 domain-containing protein.
    
 
 0.422
thrap3
Thyroid hormone receptor associated protein 3b.
  
     0.421
cramp1
Cramped chromatin regulator homolog 1.
  
     0.408
LOC108238745
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
      
 0.405
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.