STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108241895L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (333 aa)    
Predicted Functional Partners:
pc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 0.970
LOC108249655
Malate synthase-like.
  
 0.967
got2
Aspartate aminotransferase.
   
 0.963
LOC108230170
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.961
LOC108235536
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.961
LOC108240265
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.961
LOC108247449
Aspartate aminotransferase.
   
 0.955
got1
Aspartate aminotransferase.
   
 0.955
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.948
me3
Malic enzyme.
  
 0.946
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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