STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108228258Uncharacterized protein. (635 aa)    
Predicted Functional Partners:
atf7ip
Activating transcription factor 7 interacting protein.
   
 0.952
arl14ep
ADP-ribosylation factor-like 14 effector protein.
    
 
 0.859
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.690
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
    
  0.662
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
  0.662
YTHDC2
YTH domain containing 2.
   
 
 0.608
eed
Embryonic ectoderm development.
    
 0.587
mphosph8
Chromo domain-containing protein.
    
 0.581
rbbp5
Retinoblastoma binding protein 5.
   
 0.554
CDYL2
Chromodomain Y like 2.
   
 0.532
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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