LOC108230977 protein (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108230977

Guanine nucleotide binding protein (G protein), alpha 14. (355 aa)

Predicted Functional Partners:

psme3

0.679

ENSKMAP00000024068

0.669

ENSKMAP00000025284

0.669

sf1

0.667

gnb1

0.590

LOC108231344

0.590

LOC108235428

0.590

LOC108248275

0.590

GNB5

0.590

LOC108242690

0.590

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000024068	GNB5	ENSKMAP00000024068	ENSKMAP00000022626	Ig-like domain-containing protein.	G protein subunit beta 5.	0.534
ENSKMAP00000024068	LOC108230977	ENSKMAP00000024068	ENSKMAP00000016309	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), alpha 14.	0.669
ENSKMAP00000024068	LOC108231344	ENSKMAP00000024068	ENSKMAP00000007850	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.534
ENSKMAP00000024068	LOC108235428	ENSKMAP00000024068	ENSKMAP00000011570	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.534
ENSKMAP00000024068	LOC108242690	ENSKMAP00000024068	ENSKMAP00000026258	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.534
ENSKMAP00000024068	LOC108248275	ENSKMAP00000024068	ENSKMAP00000019044	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.534
ENSKMAP00000024068	gnb1	ENSKMAP00000024068	ENSKMAP00000004813	Ig-like domain-containing protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.534
ENSKMAP00000025284	GNB5	ENSKMAP00000025284	ENSKMAP00000022626	Uncharacterized protein.	G protein subunit beta 5.	0.534
ENSKMAP00000025284	LOC108230977	ENSKMAP00000025284	ENSKMAP00000016309	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14.	0.669
ENSKMAP00000025284	LOC108231344	ENSKMAP00000025284	ENSKMAP00000007850	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.534
ENSKMAP00000025284	LOC108235428	ENSKMAP00000025284	ENSKMAP00000011570	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.534
ENSKMAP00000025284	LOC108242690	ENSKMAP00000025284	ENSKMAP00000026258	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.534
ENSKMAP00000025284	LOC108248275	ENSKMAP00000025284	ENSKMAP00000019044	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.534
ENSKMAP00000025284	gnb1	ENSKMAP00000025284	ENSKMAP00000004813	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.534
GNB5	ENSKMAP00000024068	ENSKMAP00000022626	ENSKMAP00000024068	G protein subunit beta 5.	Ig-like domain-containing protein.	0.534
GNB5	ENSKMAP00000025284	ENSKMAP00000022626	ENSKMAP00000025284	G protein subunit beta 5.	Uncharacterized protein.	0.534
GNB5	LOC108230977	ENSKMAP00000022626	ENSKMAP00000016309	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), alpha 14.	0.590
GNB5	LOC108231344	ENSKMAP00000022626	ENSKMAP00000007850	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.409
GNB5	LOC108248275	ENSKMAP00000022626	ENSKMAP00000019044	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.401
GNB5	gnb1	ENSKMAP00000022626	ENSKMAP00000004813	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.409