STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108250646Uncharacterized protein; Belongs to the intermediate filament family. (646 aa)    
Predicted Functional Partners:
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.963
lmnb1
Lamin B1; Belongs to the intermediate filament family.
     
0.934
lmnb2
Uncharacterized protein; Belongs to the intermediate filament family.
     
0.908
lemd3
LEM domain containing 3.
   
 0.688
LOC108250511
Uncharacterized protein.
   
 0.687
LOC108246234
Uncharacterized protein.
   
 0.687
LOC108233898
Barrier to autointegration factor 1.
   
 0.687
Syne1
Uncharacterized protein.
    
 0.660
LOC112450232
Peptidase S1 domain-containing protein.
    
 0.657
LOC108230710
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.657
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.