STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000016874Uncharacterized protein. (85 aa)    
Predicted Functional Partners:
SCFD2
Sec1 family domain containing 2.
 
      0.897
zw10
Zw10 kinetochore protein.
    
 
 0.756
nbas
Neuroblastoma amplified sequence.
    
 
 0.728
rint1
RAD50 interactor 1.
   
 
 0.722
stx18
Syntaxin 18.
    
 
 0.689
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.564
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.538
LOC108238909
BCL2 interacting protein 1b.
    
 
 0.512
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
   0.487
cog4
Component of oligomeric golgi complex 4.
      
 0.402
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.