STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108243622Deltex 2, E3 ubiquitin ligase. (644 aa)    
Predicted Functional Partners:
notch1
Notch receptor 1b.
    
 0.805
LOC108231024
Notch receptor 1a.
    
 0.805
LOC108230740
Notch receptor 2.
    
 0.737
LOC108243718
Notch receptor 3.
    
 0.737
LOC108233117
E3 ubiquitin-protein ligase.
    
 0.596
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.596
LOC108231686
E3 ubiquitin-protein ligase.
    
 0.596
WWP2
E3 ubiquitin-protein ligase.
    
 0.596
rps27a
Ribosomal protein S27a.
    
  0.582
LOC108239343
Hairy-related 13.
    
 
 0.568
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.