STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpgs1Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
lrrc49
Leucine rich repeat containing 49.
    
 0.850
ENSKMAP00000017604
Uncharacterized protein.
    
 0.824
ttll1
Tubulin tyrosine ligase-like family, member 1.
    
 0.809
tpgs2
Tubulin polyglutamylase complex subunit 2.
    
 0.720
catip
Ciliogenesis associated TTC17 interacting protein.
      
 0.664
ttc13
Tetratricopeptide repeat domain 13.
      
 0.664
ttl
Tubulin tyrosine ligase.
    
 0.642
Fbxl13
F-box and leucine-rich repeat protein 13.
   
  
 0.638
ak8
Adenylate kinase 8; Belongs to the adenylate kinase family.
      
 0.637
ttll5
Tubulin tyrosine ligase-like family, member 5.
    
 0.499
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.