STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108235035Nudix (nucleoside diphosphate linked moiety X)-type motif 4b. (184 aa)    
Predicted Functional Partners:
dcp1a
Decapping mRNA 1A.
    
 0.727
LOC108235126
Decapping mRNA 1B.
    
 0.727
edc4
Enhancer of mRNA decapping 4.
    
 0.704
xrn1
5'-3' exoribonuclease 1.
   
 0.704
LOC108251390
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.701
LOC108247727
PAT1 homolog 2.
    
 0.701
polr3b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.667
ric8b
RIC8 guanine nucleotide exchange factor B.
      
 0.662
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.641
LOC108229852
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
  
 0.640
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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