STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000018507HARE-HTH domain-containing protein. (90 aa)    
Predicted Functional Partners:
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.885
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
 0.765
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
    
 0.659
tet2
Tet methylcytosine dioxygenase 2.
      
 0.560
hcfc2
Host cell factor C2.
    
 0.538
hcfc1
Host cell factor C1a.
    
 0.538
LOC108235820
Uncharacterized protein.
   
 0.531
LOC108237772
Forkhead box K2.
   
 0.531
foxk1
Forkhead box K1.
   
 0.531
setbp1
SET binding protein 1.
    
 0.514
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.