Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSKMAP00000018531 | POLR2E | ENSKMAP00000018531 | ENSKMAP00000007935 | annotation not available | RNA polymerase II subunit E. | 0.941 |
ENSKMAP00000018531 | Polr2d | ENSKMAP00000018531 | ENSKMAP00000014234 | annotation not available | Polymerase (RNA) II (DNA directed) polypeptide D. | 0.941 |
ENSKMAP00000018531 | leo1 | ENSKMAP00000018531 | ENSKMAP00000002496 | annotation not available | LEO1 homolog, Paf1/RNA polymerase II complex component. | 0.996 |
ENSKMAP00000018531 | polr2b | ENSKMAP00000018531 | ENSKMAP00000024169 | annotation not available | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
ENSKMAP00000018531 | polr2c | ENSKMAP00000018531 | ENSKMAP00000021802 | annotation not available | Polymerase (RNA) II (DNA directed) polypeptide C. | 0.941 |
ENSKMAP00000018531 | polr2f | ENSKMAP00000018531 | ENSKMAP00000019145 | annotation not available | Polymerase (RNA) II (DNA directed) polypeptide F. | 0.930 |
ENSKMAP00000018531 | polr2g | ENSKMAP00000018531 | ENSKMAP00000014829 | annotation not available | Polymerase (RNA) II (DNA directed) polypeptide G-like. | 0.940 |
ENSKMAP00000018531 | ssrp1 | ENSKMAP00000018531 | ENSKMAP00000015779 | annotation not available | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.938 |
ENSKMAP00000018531 | supt16h | ENSKMAP00000018531 | ENSKMAP00000005995 | annotation not available | SPT16 homolog, facilitates chromatin remodeling subunit. | 0.943 |
ENSKMAP00000018531 | supt4h1 | ENSKMAP00000018531 | ENSKMAP00000017600 | annotation not available | Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. | 0.942 |
POLR2E | ENSKMAP00000018531 | ENSKMAP00000007935 | ENSKMAP00000018531 | RNA polymerase II subunit E. | annotation not available | 0.941 |
POLR2E | Polr2d | ENSKMAP00000007935 | ENSKMAP00000014234 | RNA polymerase II subunit E. | Polymerase (RNA) II (DNA directed) polypeptide D. | 0.999 |
POLR2E | leo1 | ENSKMAP00000007935 | ENSKMAP00000002496 | RNA polymerase II subunit E. | LEO1 homolog, Paf1/RNA polymerase II complex component. | 0.991 |
POLR2E | polr2b | ENSKMAP00000007935 | ENSKMAP00000024169 | RNA polymerase II subunit E. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
POLR2E | polr2c | ENSKMAP00000007935 | ENSKMAP00000021802 | RNA polymerase II subunit E. | Polymerase (RNA) II (DNA directed) polypeptide C. | 0.999 |
POLR2E | polr2f | ENSKMAP00000007935 | ENSKMAP00000019145 | RNA polymerase II subunit E. | Polymerase (RNA) II (DNA directed) polypeptide F. | 0.999 |
POLR2E | polr2g | ENSKMAP00000007935 | ENSKMAP00000014829 | RNA polymerase II subunit E. | Polymerase (RNA) II (DNA directed) polypeptide G-like. | 0.999 |
POLR2E | ssrp1 | ENSKMAP00000007935 | ENSKMAP00000015779 | RNA polymerase II subunit E. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.960 |
POLR2E | supt16h | ENSKMAP00000007935 | ENSKMAP00000005995 | RNA polymerase II subunit E. | SPT16 homolog, facilitates chromatin remodeling subunit. | 0.957 |
POLR2E | supt4h1 | ENSKMAP00000007935 | ENSKMAP00000017600 | RNA polymerase II subunit E. | Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. | 0.998 |
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