STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108244187Cytochrome c oxidase copper chaperone COX17. (67 aa)    
Predicted Functional Partners:
ENSKMAP00000008616
Coiled-coil-helix-coiled-coil-helix domain containing 4a.
   
 0.933
LOC108235687
Coiled-coil-helix-coiled-coil-helix domain containing 4b.
   
 0.932
LOC108232354
Cytochrome C oxidase assembly factor 5.
   
  
 0.805
pum1
Pumilio RNA-binding family member 1.
    
 
 0.796
pum2
Pumilio RNA-binding family member 2.
    
 
 0.796
gfer
Sulfhydryl oxidase.
   
 0.782
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 
 0.781
pet100
PET100 cytochrome c oxidase chaperone.
   
  
 0.751
ENSKMAP00000013891
SCO cytochrome c oxidase assembly protein 2.
    
 
 0.715
LOC108243227
SCO cytochrome c oxidase assembly protein 1.
    
 
 0.710
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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