STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108250038BTB domain-containing protein. (397 aa)    
Predicted Functional Partners:
ttc8
Tetratricopeptide repeat domain 8.
    
 0.568
bbs9
Bardet-Biedl syndrome 9.
    
 0.536
bbs7
Bardet-Biedl syndrome 7.
    
 0.495
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.476
LOC108240497
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.469
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.469
klhl22
Kelch-like family member 22.
    
 
0.456
klhl8
Kelch-like family member 8.
    
 
0.456
keap1
Kelch-like ECH-associated protein 1b.
    
 
0.456
ubxn7
UBX domain protein 7.
    
  0.437
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.