STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pick1Protein interacting with prkca 1. (410 aa)    
Predicted Functional Partners:
LOC108246920
Uncharacterized protein.
    
 0.913
gria2
Glutamate receptor, ionotropic, AMPA 2b.
    
 0.913
grip2
Glutamate receptor interacting protein 2b.
   
 0.741
LOC108232151
Glutamate receptor interacting protein 2a.
   
 0.741
tspan7
Tetraspanin.
     
 0.696
LOC108251280
Tetraspanin.
     
 0.696
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 0.685
LOC108245926
N-ethylmaleimide-sensitive factor b.
   
 
 0.683
nsf
N-ethylmaleimide-sensitive factor a.
   
 
 0.683
LOC108250862
Uncharacterized protein.
    
 0.670
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.