STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lama4Laminin, alpha 4. (1473 aa)    
Predicted Functional Partners:
cd44
CD44 molecule (Indian blood group) b.
    
 0.904
ENSKMAP00000007682
Laminin, alpha 5.
 
      0.849
LOC108237256
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.826
ENSKMAP00000017720
Uncharacterized protein.
 
      0.807
ITGA6
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.803
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
   
 0.803
itga6
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.803
LOC108251529
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.799
itgb4
Integrin beta.
   
 0.794
LOC108237631
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.785
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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