creld1 protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

creld1

Cysteine-rich with EGF-like domains 1b. (406 aa)

Predicted Functional Partners:

LOC108241136

0.661

LOC108235932

0.625

LOC108245890

0.565

TOGARAM1

0.489

wdr36

0.446

hyou1

0.423

tada3

0.408

LOC108246089

0.405

Ciita

0.405

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ciita	creld1	ENSKMAP00000024341	ENSKMAP00000020165	NACHT domain-containing protein.	Cysteine-rich with EGF-like domains 1b.	0.405
LOC108235932	LOC108241136	ENSKMAP00000006260	ENSKMAP00000001568	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Ceramide synthase 2b.	0.565
LOC108235932	LOC108245890	ENSKMAP00000006260	ENSKMAP00000015893	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Matrix metallopeptidase 14a (membrane-inserted).	0.491
LOC108235932	creld1	ENSKMAP00000006260	ENSKMAP00000020165	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Cysteine-rich with EGF-like domains 1b.	0.625
LOC108241136	LOC108235932	ENSKMAP00000001568	ENSKMAP00000006260	Ceramide synthase 2b.	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.565
LOC108241136	LOC108245890	ENSKMAP00000001568	ENSKMAP00000015893	Ceramide synthase 2b.	Matrix metallopeptidase 14a (membrane-inserted).	0.564
LOC108241136	creld1	ENSKMAP00000001568	ENSKMAP00000020165	Ceramide synthase 2b.	Cysteine-rich with EGF-like domains 1b.	0.661
LOC108245890	LOC108235932	ENSKMAP00000015893	ENSKMAP00000006260	Matrix metallopeptidase 14a (membrane-inserted).	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.491
LOC108245890	LOC108241136	ENSKMAP00000015893	ENSKMAP00000001568	Matrix metallopeptidase 14a (membrane-inserted).	Ceramide synthase 2b.	0.564
LOC108245890	creld1	ENSKMAP00000015893	ENSKMAP00000020165	Matrix metallopeptidase 14a (membrane-inserted).	Cysteine-rich with EGF-like domains 1b.	0.565
LOC108246089	creld1	ENSKMAP00000022653	ENSKMAP00000020165	Chitinase, acidic.3; Belongs to the glycosyl hydrolase 18 family.	Cysteine-rich with EGF-like domains 1b.	0.405
TOGARAM1	creld1	ENSKMAP00000020120	ENSKMAP00000020165	TOG array regulator of axonemal microtubules 1.	Cysteine-rich with EGF-like domains 1b.	0.489
creld1	Ciita	ENSKMAP00000020165	ENSKMAP00000024341	Cysteine-rich with EGF-like domains 1b.	NACHT domain-containing protein.	0.405
creld1	LOC108235932	ENSKMAP00000020165	ENSKMAP00000006260	Cysteine-rich with EGF-like domains 1b.	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.625
creld1	LOC108241136	ENSKMAP00000020165	ENSKMAP00000001568	Cysteine-rich with EGF-like domains 1b.	Ceramide synthase 2b.	0.661
creld1	LOC108245890	ENSKMAP00000020165	ENSKMAP00000015893	Cysteine-rich with EGF-like domains 1b.	Matrix metallopeptidase 14a (membrane-inserted).	0.565
creld1	LOC108246089	ENSKMAP00000020165	ENSKMAP00000022653	Cysteine-rich with EGF-like domains 1b.	Chitinase, acidic.3; Belongs to the glycosyl hydrolase 18 family.	0.405
creld1	TOGARAM1	ENSKMAP00000020165	ENSKMAP00000020120	Cysteine-rich with EGF-like domains 1b.	TOG array regulator of axonemal microtubules 1.	0.489
creld1	hyou1	ENSKMAP00000020165	ENSKMAP00000021817	Cysteine-rich with EGF-like domains 1b.	Hypoxia up-regulated 1.	0.423
creld1	tada3	ENSKMAP00000020165	ENSKMAP00000008177	Cysteine-rich with EGF-like domains 1b.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.408