STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxcr4C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (379 aa)    
Predicted Functional Partners:
LOC108241502
Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.988
cxcl12
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).
   
 0.978
gna12
G protein subunit alpha 12.
    
 0.923
gna13
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.923
LOC108238272
Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.902
ackr3
Atypical chemokine receptor 3a; Belongs to the G-protein coupled receptor 1 family.
    
0.854
LOC108228275
Arrestin, beta 1.
   
 0.755
LOC108250682
Arrestin, beta 2a.
   
 0.755
GRK1
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
    
 0.732
LOC108232253
Chemokine (C-C motif) receptor 8.1; Belongs to the G-protein coupled receptor 1 family.
   
0.732
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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