STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000020312Lecithin retinol acyltransferase b, tandem duplicate 1. (282 aa)    
Predicted Functional Partners:
LOC108245157
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.921
rdh10
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.920
LOC108246350
Si:ch1073-13h15.3.
     
 0.920
retsat
Retinol saturase (all-trans-retinol 13,14-reductase).
     
 0.920
sdr16c5
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.917
dhrs3
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.917
LOC108241705
Retinoid isomerohydrolase RPE65 a.
     
 0.915
LOC108249795
Retinoid isomerohydrolase RPE65 b.
     
 0.915
LOC108240756
Retinol dehydrogenase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.910
LOC108228851
Lecithin retinol acyltransferase a.
  
  
 
0.904
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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