STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm46RNA binding motif protein 46. (503 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.692
zfyve28
Zinc finger, FYVE domain containing 28.
      
 0.657
exd3
Exonuclease 3'-5' domain containing 3.
      
 0.606
dazl
Deleted in azoospermia-like.
   
 0.585
armc9
Armadillo repeat containing 9.
      
 0.570
hspbap1
Hspb associated protein 1.
      
 0.566
LOC108231070
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.565
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.565
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.528
ctso
Cathepsin O; Belongs to the peptidase C1 family.
   
  
 0.505
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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