STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sharpinSHANK-associated RH domain interacting protein. (526 aa)    
Predicted Functional Partners:
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.980
LOC108250625
Si:dkey-181m9.8.
    
 0.968
rnf31
Uncharacterized protein.
    
 0.968
LOC108243123
Sharpin and rbck1 related.
  
0.966
LOC108231665
RanBP-type and C3HC4-type zinc finger containing 1.
   
0.965
LOC108230271
OTU deubiquitinase with linear linkage specificity a.
    
 0.910
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.727
plekhg5
Pleckstrin homology domain containing, family G (with RhoGef domain) member 5b.
    
 0.726
plekhg6
Pleckstrin homology domain containing, family G (with RhoGef domain) member 6.
    
 0.726
LOC108248894
Platelet endothelial aggregation receptor 1.
     
 0.683
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.