STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccndbp1Cyclin D-type binding-protein 1. (344 aa)    
Predicted Functional Partners:
syf2
SYF2 pre-mRNA-splicing factor.
    
 
 0.668
LOC108237714
GRB2 related adaptor protein 2a.
    
 
 0.616
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.573
Mrpl55
Zgc:171480.
      
 0.567
nbn
Nibrin.
    
 0.489
bard1
BRCA1 associated RING domain 1.
    
 0.486
ENSKMAP00000021602
Uncharacterized protein.
      
 0.480
tfpt
TCF3 (E2A) fusion partner.
    
 
 0.460
palb2
PALB2_WD40 domain-containing protein.
  
 0.458
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.458
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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