STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd3Homeobox protein HOXD3a. (403 aa)    
Predicted Functional Partners:
hoxd4
Homeobox D4a.
  
  
0.958
chd9
Chromodomain helicase DNA binding protein 9.
   
 
 0.499
LOC108239711
Limb and neural patterns a.
      
 0.491
hoxd9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.428
LOC108243384
Homeobox domain-containing protein.
   
 
0.428
pdzrn3
PDZ domain containing RING finger 3b.
     
 0.425
PDZRN4
PDZ domain containing ring finger 4.
     
 0.425
hoxd10
Homeobox protein HOXD10a.
   
 
0.415
mtx2
Metaxin 2.
      
 0.408
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.