STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108247156CDC42 effector protein (Rho GTPase binding) 3. (345 aa)    
Predicted Functional Partners:
CDC42EP5
CDC42 effector protein 5.
     
0.749
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
      
 0.655
rhoh
Ras homolog family member H.
    
 0.640
Rhoq
Uncharacterized protein.
    
 0.640
LOC108246483
Zgc:109889.
      
 0.554
mapkapk5
MAPK activated protein kinase 5.
   
 
  0.461
LOC108231127
Transmembrane protein 51b.
      
 0.444
LOC108236823
Transmembrane protein 51a.
      
 0.444
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
     
0.434
LOC108241254
CDC42 effector protein (Rho GTPase binding) 4a.
     
0.434
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.