STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp1bLow density lipoprotein receptor-related protein 1Bb. (4525 aa)    
Predicted Functional Partners:
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
   
 
 0.703
epha3
Eph receptor A3.
    
 0.691
zmym2
Zinc finger, MYM-type 2.
    
 0.677
ralgds
Ral guanine nucleotide dissociation stimulator.
      
 0.667
agrn
Agrin.
    
 0.642
hdlbp
High density lipoprotein binding protein a.
   
  
 0.634
LOC108243697
Dickkopf WNT signaling pathway inhibitor 1a.
    
 0.632
LOC108245706
Uncharacterized protein.
    
 0.618
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.606
RELN
Reelin.
    
 0.599
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.