STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108228440Transmembrane protein 259. (464 aa)    
Predicted Functional Partners:
cachd1
Cache domain containing 1.
      
 0.657
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
      
 0.635
emc1
ER membrane protein complex subunit 1.
      
 0.617
stt3a
STT3 oligosaccharyltransferase complex catalytic subunit A.
      
 0.598
ggcx
Gamma-glutamyl carboxylase.
      
 0.595
Cunh6orf120
Zgc:77929.
      
 0.586
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
 
 0.571
tmem186
Transmembrane protein 186.
      
 0.568
ngly1
N-glycanase 1.
      
 0.567
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
      
 0.566
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.