STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhf2Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (245 aa)    
Predicted Functional Partners:
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.563
fam43a
Family with sequence similarity 43 member A.
      
 0.560
snx29
Sorting nexin 29.
    
 
 0.491
micu1
Mitochondrial calcium uptake 1.
   
 0.456
micu2
Mitochondrial calcium uptake 2.
   
 0.456
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.453
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.443
LOC108244363
Uncharacterized protein.
     
 0.443
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
      
 0.438
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
     
 0.434
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.