STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhdc4Kelch domain containing 4. (572 aa)    
Predicted Functional Partners:
shcbp1
SHC SH2-domain binding protein 1.
      
 0.567
utp6
UTP6 small subunit processome component.
   
    0.563
cebpz
CCAAT enhancer binding protein zeta.
   
    0.552
ARMC6
Armadillo repeat containing 6.
      
 0.489
rbm28
RNA binding motif protein 28.
   
    0.485
rpf2
Ribosome production factor 2 homolog.
   
    0.472
grwd1
Glutamate-rich WD repeat containing 1.
   
    0.471
bms1
BMS1 ribosome biogenesis factor.
   
    0.446
wdr74
WD repeat domain 74.
   
    0.433
LOC108250319
PWP2 small subunit processome component.
   
    0.410
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.