STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphp1Nephronophthisis 1. (565 aa)    
Predicted Functional Partners:
nphp4
Uncharacterized protein.
   
 0.982
nox5
RPGRIP1 like.
    
 0.947
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.786
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.764
rpgr
Retinitis pigmentosa GTPase regulator b.
    
 0.749
wdr34
WD repeat domain 34.
    
 0.720
ENSKMAP00000006349
Uncharacterized protein.
    
 0.719
ahi1
Abelson helper integration site 1.
    
 0.706
actl6a
Actin-like 6A; Belongs to the actin family.
    
 0.706
tmem67
Transmembrane protein 67.
   
  
 0.699
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.