STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan3Tetraspanin. (253 aa)    
Predicted Functional Partners:
gadd45gip1
Growth arrest and DNA-damage-inducible, gamma interacting protein 1.
      
 0.679
siva1
Apoptosis regulatory protein Siva; Induces CD27-mediated apoptosis. Inhibits BCL2L1 isoform Bcl- x(L) anti-apoptotic activity. Inhibits activation of NF-kappa-B and promotes T-cell receptor-mediated apoptosis.
      
 0.679
gmnn
Geminin DNA replication inhibitor.
      
 0.495
igsf8
Immunoglobulin superfamily, member 8.
    
 
 0.476
ptgfrn
Si:ch211-132g1.7.
    
 
 0.465
rcn2
Reticulocalbin 2.
   
  
 0.434
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.405
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.403
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.