STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac11Histone deacetylase 11. (367 aa)    
Predicted Functional Partners:
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.855
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.855
ncor1
Nuclear receptor corepressor 1.
    
 0.675
ncor2
Nuclear receptor corepressor 2.
    
 0.675
kat2b
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
   
 0.661
ehmt2
Euchromatic histone-lysine N-methyltransferase 2.
  
 0.653
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.652
LOC108234793
SIN3 transcription regulator family member Ab.
   
 0.642
LOC108251067
SIN3 transcription regulator family member Aa.
   
 0.642
haus5
SIN3 transcription regulator family member B.
   
 0.642
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.