STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx3Iroquois homeobox 3a. (432 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
  
 0.662
sall4
Spalt-like transcription factor 4.
      
 0.656
ush2a
Usher syndrome 2A (autosomal recessive, mild).
    
 
 0.617
arid4b
Translocase of outer mitochondrial membrane 20.
    
 
 0.609
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 
 0.609
selenos
Selenoprotein S.
   
  
 0.597
fto
FTO alpha-ketoglutarate dependent dioxygenase.
      
 0.588
LOC108250121
Homeobox domain-containing protein.
  
  
0.567
gask1b
Golgi associated kinase 1B.
      
 0.566
irx5
Iroquois homeobox 5a.
  
  
0.566
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.