STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx6Iroquois homeobox 6a. (508 aa)    
Predicted Functional Partners:
hhex
Homeobox domain-containing protein.
   
 
 0.463
LOC108248160
Natriuretic peptide A.
      
 0.463
lpcat2
Lysophosphatidylcholine acyltransferase 2.
     
 0.446
pbx3
Homeobox domain-containing protein.
    
0.442
LOC108246256
Homeobox domain-containing protein.
    
0.442
LOC108239658
Pre-B-cell leukemia homeobox 1a.
    
0.442
LOC108241339
Pre-B-cell leukemia transcription factor 4.
    
0.442
LOC108245987
Pre-B-cell leukemia homeobox 2.
    
0.442
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.