STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108246617Fork-head domain-containing protein. (338 aa)    
Predicted Functional Partners:
LOC108248543
Zgc:153115.
    
 0.707
LOC108230469
Cysteine-serine-rich nuclear protein 1b.
      
 0.679
LOC108234599
Smoothelin b.
      
 0.679
LOC108238578
Cysteine-serine-rich nuclear protein 1a.
      
 0.679
mecp2
Methyl CpG binding protein 2.
    
 0.616
sirt1
Sirtuin 1.
    
 0.592
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.585
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 0.575
mknk2
MAPK interacting serine/threonine kinase 2b; Belongs to the protein kinase superfamily.
   
  
 0.566
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.532
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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