STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAF1DDB1 and CUL4 associated factor 1. (1564 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.922
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 
 0.883
LOC108235131
SAM domain and HD domain 1.
    
 
 0.879
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.822
cul4b
Cullin 4B; Belongs to the cullin family.
   
 
 0.771
LOC108229807
Cullin 4A; Belongs to the cullin family.
   
 
 0.771
rnf7
Ring finger protein 7.
    
 
 0.699
LOC108234347
DET1 and DDB1 associated 1.
    
 
 0.591
nf2
Neurofibromin 2a (merlin).
    
 
 0.591
DDA1
DET1 and DDB1 associated 1.
    
 
 0.591
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.