STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsfl1cNSFL1 (p97) cofactor (p47). (374 aa)    
Predicted Functional Partners:
ubxn6
UBX domain protein 6.
    
 0.994
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.992
LOC108241508
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.992
plaa
Phospholipase A2-activating protein.
    
 
 0.987
yod1
YOD1 deubiquitinase.
   
 
 0.985
ubxn2a
UBX domain protein 2A.
  
 
 
0.982
ubxn1
UBX domain protein 1.
   
 0.967
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 
 0.965
ubxn4
UBX domain-containing protein.
    
 0.957
ubxn7
UBX domain protein 7.
    
 
 0.957
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (16%) [HD]