STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108242829Cadherin-related family member 1a. (870 aa)    
Predicted Functional Partners:
LOC108241224
Uncharacterized protein.
    
 0.520
LOC108236365
Junction plakoglobin a.
    
 0.520
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.520
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.479
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.479
LOC108249876
Uncharacterized protein.
   
 0.452
pcdh15
Protocadherin-related 15a.
   
0.452
LOC108249191
Protocadherin-related 15b.
   
0.452
ush1c
Usher syndrome 1C.
   
 
 0.436
ENSKMAP00000016533
Uncharacterized protein.
 
      0.416
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.