STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108229818OTU deubiquitinase 7A. (956 aa)    
Predicted Functional Partners:
ubb
Uncharacterized protein.
   
  0.775
ubxn7
UBX domain protein 7.
   
 
 0.767
rps27a
Ribosomal protein S27a.
   
  0.749
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.741
LOC108249194
Adhesion G protein-coupled receptor A1a.
      
 0.679
tnip1
TNFAIP3 interacting protein 1.
   
 0.666
LOC108248872
Acyl-CoA binding domain containing 4.
    
 
 0.665
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.658
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.627
LOC108244933
Fer-1 like family member 4.
      
 0.594
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.