STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf114Ring finger protein 114. (227 aa)    
Predicted Functional Partners:
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.496
KLHL28
Kelch like family member 28.
    
 
 0.495
LOC108245383
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.488
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
    
 
 0.482
rnf4
RING-type domain-containing protein.
   
 
 0.442
LOC108247640
Coronin; Belongs to the WD repeat coronin family.
      
 0.441
zbtb39
Zinc finger and BTB domain containing 39.
   
 0.433
znf653
Zinc finger protein 653.
   
 0.428
zc3hc1
Zinc finger, C3HC-type containing 1.
      
 0.408
dcaf15
DDB1 and CUL4 associated factor 15.
      
 0.408
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.