STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000024388TROVE domain-containing protein. (983 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.991
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.969
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.967
POLR2E
RNA polymerase II subunit E.
   
 0.965
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
   
 0.964
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
  0.962
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.962
birc6
Baculoviral IAP repeat containing 6.
   
 0.962
LOC108250675
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.955
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
 0.953
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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