STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108245469Zinc finger protein 395b. (503 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.623
rpl21
Ribosomal protein L21.
   
 
 0.553
bard1
BRCA1 associated RING domain 1.
    
 0.528
rag2
Recombination activating gene 2.
   
 0.523
babam1
BRISC and BRCA1 A complex member 1.
    
 0.495
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.492
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.490
rpl8
Ribosomal protein L8.
   
 
 0.473
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.460
rps27a
Ribosomal protein S27a.
    
  0.445
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.