STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d16TBC1 domain family, member 16. (749 aa)    
Predicted Functional Partners:
LOC108243534
RAB4B, member RAS oncogene family.
    
 0.699
rab4a
RAB4a, member RAS oncogene family.
    
 0.699
Wdfy4
WDFY family member 4.
      
 0.664
ENSKMAP00000027398
Uncharacterized protein.
      
 0.664
dgke
Diacylglycerol kinase.
      
 0.661
card14
Caspase recruitment domain family, member 14.
      
 0.635
tbc1d23
TBC1 domain family, member 23.
      
 0.588
wdr5
WD repeat domain 5.
      
 0.571
tbc1d1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.
      
0.491
tbc1d4
TBC1 domain family, member 4.
      
0.491
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.