STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108238600Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
LOC108250675
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.858
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.847
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.844
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.833
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.829
LOC108238308
Transducin (beta)-like 1 X-linked receptor 1b.
   
 0.828
LOC108239707
Transducin beta like 1 X-linked.
   
 0.828
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.819
sgf29
SAGA complex associated factor 29.
    
 0.805
LOC108251202
Nuclear receptor subfamily 1, group d, member 1.
    
 0.766
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.