STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smndc1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
phf5a
PHD finger protein 5A.
     
 0.961
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 
 0.955
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.951
rbm17
RNA binding motif protein 17.
   
 
 0.939
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
     
 0.926
sf3b1
Splicing factor 3b, subunit 1.
   
 0.854
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 
  0.840
sf3a2
Splicing factor 3a, subunit 2.
    
  0.809
sf3b3
Splicing factor 3b, subunit 3.
  
 
 0.804
sf3b6
Splicing factor 3b, subunit 6.
    
 0.798
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.